Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merr family transcriptional regulator | SD1D_RS00655 | Not Available | Positive | 129792 - 130517 | 28127.8 |
| duf2179 domain-containing protein | SD1D_RS00660 | Not Available | Negative | 130631 - 131167 | 19313.0 |
| hypothetical protein | SD1D_RS00665 | Not Available | Negative | 131246 - 132994 | 68506.9 |
| cellulase family glycosylhydrolase | SD1D_RS00670 | Not Available | Negative | 133280 - 136120 | 106307.0 |
| fic family protein | SD1D_RS12240 | Not Available | Positive | 136409 - 137329 | 35796.2 |
| cellulase family glycosylhydrolase | SD1D_RS00685 | Not Available | Negative | 137401 - 139290 | 71074.4 |
| carbohydrate-binding protein | SD1D_RS00690 | Not Available | Negative | 139511 - 140995 | 53559.1 |
| methyl-accepting chemotaxis protein | SD1D_RS00695 | Not Available | Negative | 141481 - 143535 | 75757.1 |
| 5'/3'-nucleotidase sure | SD1D_RS00700 | Not Available | Positive | 143775 - 144494 | 26338.8 |
| tocopherol cyclase family protein | SD1D_RS00705 | Not Available | Positive | 144669 - 145547 | 33659.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
