Herbinix luporum strain SD1D

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix luporum strain SD1D is a Gram-positive, non-motile, anaerobic bacterium that thrives in thermophilic conditions, with an optimal growth temperature of 45°C. This strain is notable for its singular replicon, indicating a streamlined genetic structure. Unlike some bacterial species, Herbinix luporum SD1D does not form spores, which could affect its survival strategies in fluctuating environmental conditions. The anaerobic nature of Herbinix luporum suggests that it plays a role in environments devoid of oxygen, potentially contributing to anaerobic processes such as fermentation or decomposition in thermophilic ecosystems. Its optimal temperature range positions it among organisms that can thrive in high-temperature habitats, which are often rich in organic matter and other microbial life. The accession number for this strain is NZ_LN879430.1, which provides a reference for further genetic and functional studies. Understanding the ecological role of Herbinix luporum SD1D may illuminate its contributions to nutrient cycling and energy flow in its native habitats, particularly in anaerobic thermophilic environments. Its metabolic processes could be integral to the breakdown of complex organic materials, thus influencing microbial community dynamics and ecosystem health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix luporum
Strainstrain SD1D

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix luporum strain SD1D chromosome I, complete sequence.

Gene Summary

Adenine Count

845452 bp

Thymine Count

844048 bp

Guanine Count

458713 bp

Cytosine Count

461139 bp

Genome Length

2609352 bp

Protein-coding Genes

2309 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
merr family transcriptional regulatorSD1D_RS00655Not AvailablePositive129792 - 13051728127.8
duf2179 domain-containing proteinSD1D_RS00660Not AvailableNegative130631 - 13116719313.0
hypothetical proteinSD1D_RS00665Not AvailableNegative131246 - 13299468506.9
cellulase family glycosylhydrolaseSD1D_RS00670Not AvailableNegative133280 - 136120106307.0
fic family proteinSD1D_RS12240Not AvailablePositive136409 - 13732935796.2
cellulase family glycosylhydrolaseSD1D_RS00685Not AvailableNegative137401 - 13929071074.4
carbohydrate-binding proteinSD1D_RS00690Not AvailableNegative139511 - 14099553559.1
methyl-accepting chemotaxis proteinSD1D_RS00695Not AvailableNegative141481 - 14353575757.1
5'/3'-nucleotidase sureSD1D_RS00700Not AvailablePositive143775 - 14449426338.8
tocopherol cyclase family proteinSD1D_RS00705Not AvailablePositive144669 - 14554733659.2

Displaying genes 241 – 250 of 2450 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.