Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | SD1D_RS00605 | Not Available | Negative | 121298 - 122347 | 41311.2 |
| l-arabinose isomerase | SD1D_RS00610 | Not Available | Positive | 122540 - 124033 | 56153.5 |
| xylulokinase | SD1D_RS00615 | Not Available | Positive | 124073 - 125674 | 58954.9 |
| l-ribulose-5-phosphate 4-epimerase | SD1D_RS00620 | Not Available | Positive | 125722 - 126411 | 25373.1 |
| inorganic diphosphatase | SD1D_RS00625 | Not Available | Positive | 126530 - 127069 | 20681.9 |
| stm3941 family protein | SD1D_RS00630 | Not Available | Positive | 127307 - 127828 | 19703.7 |
| 30s ribosomal protein s6 | SD1D_RS00635 | Not Available | Positive | 127991 - 128278 | 11186.5 |
| single-stranded dna-binding protein | SD1D_RS00640 | Not Available | Positive | 128320 - 128766 | 16740.7 |
| 30s ribosomal protein s18 | SD1D_RS00645 | Not Available | Positive | 128801 - 129067 | 10273.6 |
| hypothetical protein | SD1D_RS00650 | Not Available | Positive | 129224 - 129724 | 19114.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
