Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | Positive | 110961 - 113860 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 114003 - 114074 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 114109 - 114179 | Not Available |
| helix-turn-helix domain-containing protein | SD1D_RS00570 | Not Available | Positive | 114384 - 115184 | 30654.9 |
| Trna-cys | Not Available | Not Available | Positive | 115369 - 115439 | Not Available |
| abc transporter permease | SD1D_RS00580 | Not Available | Positive | 115945 - 116931 | 36290.2 |
| iron chelate uptake abc transporter family permease subunit | SD1D_RS00585 | Not Available | Positive | 116916 - 117887 | 35898.7 |
| abc transporter atp-binding protein | SD1D_RS00590 | Not Available | Positive | 117884 - 118642 | 28762.3 |
| siderophore abc transporter substrate-binding protein | SD1D_RS00595 | Not Available | Positive | 118680 - 119663 | 35182.4 |
| fpra family a-type flavoprotein | SD1D_RS00600 | Not Available | Negative | 119992 - 121200 | 46079.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
