Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS00505 | Not Available | Positive | 101600 - 102700 | 42847.1 |
| spore protease yyac | SD1D_RS00510 | Not Available | Negative | 102701 - 103303 | 22240.4 |
| lysm peptidoglycan-binding domain-containing protein | SD1D_RS00515 | Not Available | Positive | 103607 - 104962 | 51543.1 |
| duf5711 family protein | SD1D_RS00520 | Not Available | Positive | 105150 - 106295 | 43508.2 |
| cvpa family protein | SD1D_RS00525 | Not Available | Positive | 106350 - 107018 | 24789.1 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | SD1D_RS00530 | Not Available | Positive | 107093 - 108055 | 34631.1 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 108514 - 110046 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 110094 - 110211 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 110248 - 110321 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 110444 - 110516 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
