Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | SD1D_RS00455 | Not Available | Positive | 90243 - 92552 | 88649.8 |
| m48 family metallopeptidase | SD1D_RS00460 | Not Available | Positive | 92609 - 93334 | 28666.2 |
| alkyl hydroperoxide reductase subunit c | SD1D_RS00465 | Not Available | Positive | 93776 - 94339 | 20918.6 |
| alkyl hydroperoxide reductase subunit f | SD1D_RS00470 | Not Available | Positive | 94351 - 95880 | 55454.1 |
| arsr/smtb family transcription factor | SD1D_RS00475 | Not Available | Positive | 96155 - 96523 | 14221.2 |
| cation transporter | SD1D_RS00480 | Not Available | Positive | 96667 - 96888 | 8153.33 |
| heavy metal translocating p-type atpase | SD1D_RS00485 | Not Available | Positive | 96901 - 98745 | 66985.7 |
| cyth domain-containing protein | SD1D_RS00490 | Not Available | Positive | 98810 - 99406 | 22846.5 |
| hypothetical protein | SD1D_RS00495 | Not Available | Negative | 99513 - 99863 | 12586.3 |
| cation:proton antiporter | SD1D_RS00500 | Not Available | Negative | 99893 - 101128 | 43276.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
