Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 1550539 - 1550550 | Not Available |
| crp/fnr family transcriptional regulator | SD1D_RS07200 | Not Available | Negative | 1550642 - 1551280 | 23811.9 |
| cupin domain-containing protein | SD1D_RS07205 | Not Available | Positive | 1551402 - 1551716 | 11902.3 |
| permease | SD1D_RS07210 | Not Available | Positive | 1551733 - 1552215 | 17190.1 |
| permease | SD1D_RS07215 | Not Available | Positive | 1552212 - 1552928 | 26790.1 |
| spor domain-containing protein | SD1D_RS12550 | Not Available | Negative | 1553016 - 1553204 | 6797.22 |
| Spor domain-containing protein | SD1D_RS12755 | Not Available | Positive | 1553199 - 1553402 | 7232.81 |
| shoct domain-containing protein | SD1D_RS07230 | Not Available | Positive | 1553494 - 1553712 | 8197.85 |
| Site-specific recombinase | SD1D_RS07235 | Not Available | Positive | 1553747 - 1555309 | 60327.2 |
| Putative recombinase | SD1D_RS07240 | Not Available | Positive | 1555310 - 1555723 | 15930.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
