Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | SD1D_RS00260 | Not Available | Positive | 56858 - 57943 | 40901.0 |
| scp2 sterol-binding domain-containing protein | SD1D_RS00265 | Not Available | Positive | 57947 - 58942 | 37788.5 |
| sensor histidine kinase | SD1D_RS00270 | Not Available | Negative | 58949 - 59662 | 26704.2 |
| hit family protein | SD1D_RS00275 | Not Available | Positive | 59790 - 60203 | 15389.7 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | SD1D_RS00280 | Not Available | Negative | 60281 - 61345 | 39081.4 |
| tigr03905 family tscpd domain-containing protein | SD1D_RS00285 | Not Available | Negative | 61342 - 61590 | 8861.87 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | SD1D_RS00290 | Not Available | Positive | 62002 - 62703 | 25688.2 |
| stage ii sporulation protein d | SD1D_RS00295 | Not Available | Negative | 62739 - 63710 | 36165.2 |
| hypothetical protein | SD1D_RS00300 | Not Available | Positive | 63882 - 64277 | 16130.6 |
| duf3137 domain-containing protein | SD1D_RS00305 | Not Available | Negative | 64367 - 65290 | 35890.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
