Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cpaf family protein | SD1D_RS00210 | Not Available | Positive | 45448 - 46659 | 45447.4 |
| type ii secretion system f family protein | SD1D_RS00215 | Not Available | Positive | 46674 - 47390 | 26847.8 |
| hypothetical protein | SD1D_RS00220 | Not Available | Positive | 47402 - 48886 | 58231.7 |
| flp1 family type ivb pilin | SD1D_RS00225 | Not Available | Positive | 48925 - 49098 | 6465.19 |
| duf5702 domain-containing protein | SD1D_RS00230 | Not Available | Positive | 49120 - 51627 | 96300.5 |
| tade family protein | SD1D_RS00235 | Not Available | Positive | 51830 - 52723 | 34384.4 |
| hypothetical protein | SD1D_RS00240 | Not Available | Positive | 52742 - 53185 | 16317.3 |
| tade family protein | SD1D_RS00245 | Not Available | Positive | 53209 - 53775 | 21511.7 |
| duf6382 domain-containing protein | SD1D_RS00250 | Not Available | Positive | 53829 - 55196 | 53594.0 |
| glycerol kinase glpk | SD1D_RS00255 | Not Available | Positive | 55347 - 56840 | 55772.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
