Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase gale | SD1D_RS00160 | Not Available | Positive | 31429 - 32442 | 37492.8 |
| duf4846 domain-containing protein | SD1D_RS00165 | Not Available | Negative | 32681 - 33730 | 40276.7 |
| methionine--trna ligase | SD1D_RS00170 | Not Available | Positive | 34239 - 36212 | 74467.7 |
| duf885 domain-containing protein | SD1D_RS00175 | Not Available | Negative | 36278 - 38059 | 68800.6 |
| duf6240 domain-containing protein | SD1D_RS00180 | Not Available | Positive | 38280 - 41366 | 118551.0 |
| flagellin | SD1D_RS12530 | Not Available | Positive | 41406 - 42980 | 56672.6 |
| flagellar protein flis | SD1D_RS00190 | Not Available | Positive | 43026 - 43505 | 18165.9 |
| yaal family protein | SD1D_RS00195 | Not Available | Negative | 43639 - 43866 | 8844.69 |
| pro-sigmak processing inhibitor bofa family protein | SD1D_RS00200 | Not Available | Positive | 44001 - 44273 | 9679.51 |
| hypothetical protein | SD1D_RS00205 | Not Available | Positive | 44423 - 45412 | 38466.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
