Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ecf transporter s component | SD1D_RS00110 | Not Available | Positive | 18346 - 18909 | 20794.7 |
| transketolase | SD1D_RS00115 | Not Available | Positive | 19131 - 21113 | 72085.9 |
| response regulator transcription factor | SD1D_RS00120 | Not Available | Positive | 21328 - 22005 | 26038.8 |
| sensor histidine kinase | SD1D_RS00125 | Not Available | Positive | 22139 - 23461 | 50782.6 |
| abc transporter atp-binding protein | SD1D_RS00130 | Not Available | Negative | 23519 - 25294 | 66561.8 |
| abc transporter atp-binding protein | SD1D_RS00135 | Not Available | Negative | 25285 - 27033 | 65548.9 |
| gtp pyrophosphokinase family protein | SD1D_RS00140 | Not Available | Positive | 27539 - 28330 | 30483.6 |
| s1 rna-binding domain-containing protein | SD1D_RS00145 | Not Available | Negative | 28382 - 29320 | 34252.0 |
| hypothetical protein | SD1D_RS00150 | Not Available | Negative | 29378 - 30115 | 28329.7 |
| cap domain-containing protein | SD1D_RS00155 | Not Available | Negative | 30211 - 31239 | 38803.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
