Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | SD1D_RS06235 | Not Available | Negative | 1356527 - 1358272 | 64683.5 |
| had family hydrolase | SD1D_RS06240 | Not Available | Negative | 1358522 - 1359358 | 31822.3 |
| helix-turn-helix transcriptional regulator | SD1D_RS12650 | Not Available | Positive | 1359524 - 1360096 | 21839.8 |
| methyl-accepting chemotaxis protein | SD1D_RS06250 | Not Available | Negative | 1360152 - 1362152 | 72776.3 |
| zinc-binding dehydrogenase | SD1D_RS06255 | Not Available | Positive | 1362440 - 1363501 | 37446.4 |
| hypothetical protein | SD1D_RS06260 | Not Available | Negative | 1363571 - 1364377 | 30338.8 |
| helix-turn-helix domain-containing protein | SD1D_RS06265 | Not Available | Positive | 1364613 - 1365503 | 34353.2 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | SD1D_RS06270 | Not Available | Negative | 1365549 - 1366337 | 27478.2 |
| hypothetical protein | SD1D_RS06275 | Not Available | Negative | 1366627 - 1367199 | 21922.4 |
| cpbp family intramembrane glutamic endopeptidase | SD1D_RS06280 | Not Available | Negative | 1367519 - 1368145 | 24472.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
