Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 9 protein | SD1D_RS06135 | Not Available | Negative | 1332205 - 1335180 | 109597.0 |
| glycoside hydrolase family 48 protein | SD1D_RS06140 | Not Available | Negative | 1335296 - 1338052 | 103100.0 |
| hypothetical protein | SD1D_RS06145 | Not Available | Negative | 1338749 - 1338955 | 7516.55 |
| substrate-binding domain-containing protein | SD1D_RS06150 | Not Available | Negative | 1339129 - 1340220 | 41274.6 |
| cpsb/capc family capsule biosynthesis tyrosine phosphatase | SD1D_RS06155 | Not Available | Negative | 1340408 - 1341100 | 26225.2 |
| polysaccharide biosynthesis tyrosine autokinase | SD1D_RS06160 | Not Available | Negative | 1341093 - 1342499 | 52525.4 |
| methyl-accepting chemotaxis protein | SD1D_RS06165 | Not Available | Negative | 1342720 - 1344807 | 77010.9 |
| arac family transcriptional regulator | SD1D_RS06170 | Not Available | Negative | 1344958 - 1345917 | 37200.2 |
| staygreen family protein | SD1D_RS06175 | Not Available | Negative | 1345986 - 1346432 | 17548.9 |
| nad(p)h:quinone oxidoreductase | SD1D_RS06180 | Not Available | Negative | 1346546 - 1347157 | 21870.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
