Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | SD1D_RS06085 | Not Available | Negative | 1321203 - 1321580 | 13807.7 |
| alpha/beta fold hydrolase | SD1D_RS06090 | Not Available | Negative | 1321712 - 1322530 | 30931.2 |
| nadph-dependent glutamate synthase | SD1D_RS06095 | Not Available | Negative | 1322675 - 1324066 | 49816.9 |
| sulfide/dihydroorotate dehydrogenase-like fad/nad-binding protein | SD1D_RS06100 | Not Available | Negative | 1324083 - 1324964 | 32712.8 |
| lysr family transcriptional regulator | SD1D_RS06105 | Not Available | Positive | 1325294 - 1326202 | 34777.6 |
| abc transporter permease | SD1D_RS06110 | Not Available | Negative | 1326272 - 1329550 | 124198.0 |
| abc transporter atp-binding protein | SD1D_RS06115 | Not Available | Negative | 1329550 - 1330254 | 26088.7 |
| vtc domain-containing protein | SD1D_RS06120 | Not Available | Negative | 1330474 - 1330842 | 14489.4 |
| duf2200 domain-containing protein | SD1D_RS06125 | Not Available | Positive | 1331030 - 1331380 | 13759.9 |
| ferritin | SD1D_RS06130 | Not Available | Negative | 1331508 - 1331987 | 18651.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
