Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s binding protein | SD1D_RS05890 | Not Available | Negative | 1274828 - 1275415 | 23032.3 |
| 4fe-4s binding protein | SD1D_RS05895 | Not Available | Negative | 1275412 - 1275615 | 7124.99 |
| abc transporter atp-binding protein | SD1D_RS05900 | Not Available | Negative | 1275700 - 1276368 | 24539.9 |
| abc transporter permease | SD1D_RS05905 | Not Available | Negative | 1276411 - 1279602 | 122102.0 |
| translation factor gtpase family protein | SD1D_RS05910 | Not Available | Negative | 1279616 - 1282345 | 103672.0 |
| duf4363 family protein | SD1D_RS05915 | Not Available | Negative | 1282531 - 1282896 | 13981.1 |
| duf421 domain-containing protein | SD1D_RS05920 | Not Available | Negative | 1282906 - 1283634 | 27642.1 |
| mate family efflux transporter | SD1D_RS05925 | Not Available | Positive | 1283873 - 1285207 | 49504.7 |
| endo-1,4-beta-xylanase | SD1D_RS05930 | Not Available | Negative | 1285215 - 1286495 | 48851.3 |
| dhhw family protein | SD1D_RS05935 | Not Available | Negative | 1286619 - 1287722 | 43101.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
