Herbinix luporum strain SD1D

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix luporum strain SD1D is a Gram-positive, non-motile, anaerobic bacterium that thrives in thermophilic conditions, with an optimal growth temperature of 45°C. This strain is notable for its singular replicon, indicating a streamlined genetic structure. Unlike some bacterial species, Herbinix luporum SD1D does not form spores, which could affect its survival strategies in fluctuating environmental conditions. The anaerobic nature of Herbinix luporum suggests that it plays a role in environments devoid of oxygen, potentially contributing to anaerobic processes such as fermentation or decomposition in thermophilic ecosystems. Its optimal temperature range positions it among organisms that can thrive in high-temperature habitats, which are often rich in organic matter and other microbial life. The accession number for this strain is NZ_LN879430.1, which provides a reference for further genetic and functional studies. Understanding the ecological role of Herbinix luporum SD1D may illuminate its contributions to nutrient cycling and energy flow in its native habitats, particularly in anaerobic thermophilic environments. Its metabolic processes could be integral to the breakdown of complex organic materials, thus influencing microbial community dynamics and ecosystem health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix luporum
Strainstrain SD1D

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix luporum strain SD1D chromosome I, complete sequence.

Gene Summary

Adenine Count

845452 bp

Thymine Count

844048 bp

Guanine Count

458713 bp

Cytosine Count

461139 bp

Genome Length

2609352 bp

Protein-coding Genes

2309 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine-type recombinase/integraseSD1D_RS05840Not AvailablePositive1265983 - 126703240469.7
hypothetical proteinSD1D_RS05845Not AvailableNegative1267191 - 126756814499.0
duf4256 domain-containing proteinSD1D_RS05850Not AvailableNegative1267892 - 126847022207.4
duf3307 domain-containing proteinSD1D_RS05855Not AvailableNegative1268640 - 126938928830.4
satd family proteinSD1D_RS05860Not AvailableNegative1269382 - 127006225836.4
trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmoSD1D_RS05865Not AvailableNegative1270421 - 127116128459.0
mbl fold metallo-hydrolaseSD1D_RS05870Not AvailableNegative1271207 - 127194429096.8
rna polymerase sigma factorSD1D_RS05875Not AvailablePositive1272137 - 127261018544.3
hypothetical proteinSD1D_RS05880Not AvailablePositive1272610 - 127382144586.4
cupin domain-containing proteinSD1D_RS05885Not AvailablePositive1274301 - 127478318664.2

Displaying genes 1281 – 1290 of 2450 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.