Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-type recombinase/integrase | SD1D_RS05840 | Not Available | Positive | 1265983 - 1267032 | 40469.7 |
| hypothetical protein | SD1D_RS05845 | Not Available | Negative | 1267191 - 1267568 | 14499.0 |
| duf4256 domain-containing protein | SD1D_RS05850 | Not Available | Negative | 1267892 - 1268470 | 22207.4 |
| duf3307 domain-containing protein | SD1D_RS05855 | Not Available | Negative | 1268640 - 1269389 | 28830.4 |
| satd family protein | SD1D_RS05860 | Not Available | Negative | 1269382 - 1270062 | 25836.4 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | SD1D_RS05865 | Not Available | Negative | 1270421 - 1271161 | 28459.0 |
| mbl fold metallo-hydrolase | SD1D_RS05870 | Not Available | Negative | 1271207 - 1271944 | 29096.8 |
| rna polymerase sigma factor | SD1D_RS05875 | Not Available | Positive | 1272137 - 1272610 | 18544.3 |
| hypothetical protein | SD1D_RS05880 | Not Available | Positive | 1272610 - 1273821 | 44586.4 |
| cupin domain-containing protein | SD1D_RS05885 | Not Available | Positive | 1274301 - 1274783 | 18664.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
