Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c40 family peptidase | SD1D_RS05640 | Not Available | Positive | 1221827 - 1223029 | 43883.0 |
| muts-related protein | SD1D_RS05645 | Not Available | Positive | 1223242 - 1224924 | 65010.8 |
| ribonuclease hi | SD1D_RS05650 | Not Available | Positive | 1224935 - 1225420 | 18066.5 |
| dna mismatch repair protein muts | SD1D_RS05655 | Not Available | Positive | 1225515 - 1228160 | 99898.7 |
| dna mismatch repair endonuclease mutl | SD1D_RS05660 | Not Available | Positive | 1228176 - 1230116 | 73036.4 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | SD1D_RS05665 | Not Available | Positive | 1230129 - 1231073 | 36543.0 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | SD1D_RS05670 | Not Available | Positive | 1231151 - 1232410 | 45265.6 |
| duf4321 domain-containing protein | SD1D_RS05675 | Not Available | Positive | 1232601 - 1232876 | 9878.65 |
| radc family protein | SD1D_RS05680 | Not Available | Positive | 1232928 - 1233629 | 26179.2 |
| rod shape-determining protein | SD1D_RS05685 | Not Available | Positive | 1233680 - 1234702 | 36745.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
