Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit beta | SD1D_RS00010 | Not Available | Positive | 1610 - 2719 | 42127.2 |
| rna-binding s4 domain-containing protein | SD1D_RS00015 | Not Available | Positive | 2835 - 3044 | 7622.46 |
| dna replication/repair protein recf | SD1D_RS00020 | Not Available | Positive | 3106 - 4191 | 41800.7 |
| dna topoisomerase (atp-hydrolyzing) subunit b | SD1D_RS00025 | Not Available | Positive | 4299 - 6206 | 71388.6 |
| dna gyrase subunit a | SD1D_RS00030 | Not Available | Positive | 6307 - 8826 | 95175.2 |
| fumarate hydratase | SD1D_RS00035 | Not Available | Positive | 8868 - 9710 | 30505.4 |
| fe-s-containing hydro-lyase | SD1D_RS00040 | Not Available | Positive | 9756 - 10289 | 19465.7 |
| Trna-ser | Not Available | Not Available | Positive | 10388 - 10475 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 11281 - 12813 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 12861 - 12978 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
