Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | SD1D_RS05340 | Not Available | Positive | 1160419 - 1161222 | 29070.2 |
| nudix hydrolase | SD1D_RS05345 | Not Available | Positive | 1161253 - 1161786 | 20155.9 |
| stage ii sporulation protein m | SD1D_RS05350 | Not Available | Positive | 1161867 - 1162481 | 23764.2 |
| tyrosine recombinase | SD1D_RS05355 | Not Available | Positive | 1162533 - 1163408 | 32970.7 |
| 3-deoxy-7-phosphoheptulonate synthase | SD1D_RS05360 | Not Available | Negative | 1163615 - 1164643 | 38593.4 |
| pyrimidine-nucleoside phosphorylase | SD1D_RS05365 | Not Available | Positive | 1164850 - 1166175 | 47577.9 |
| ig domain-containing protein | SD1D_RS05370 | Not Available | Positive | 1166244 - 1166792 | 20880.5 |
| d-alanyl-d-alanine carboxypeptidase family protein | SD1D_RS05375 | Not Available | Positive | 1166887 - 1168116 | 45252.8 |
| metallophosphoesterase | SD1D_RS05380 | Not Available | Positive | 1168217 - 1169095 | 33703.2 |
| segregation and condensation protein a | SD1D_RS05385 | Not Available | Positive | 1169120 - 1169896 | 30556.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
