Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yabp/yqfc family sporulation protein | SD1D_RS05240 | Not Available | Positive | 1139138 - 1139500 | 13849.1 |
| sporulation protein yqfd | SD1D_RS05245 | Not Available | Positive | 1139542 - 1140783 | 48326.0 |
| phoh family protein | SD1D_RS05250 | Not Available | Positive | 1140758 - 1141816 | 39682.4 |
| hdig domain-containing metalloprotein | SD1D_RS05255 | Not Available | Positive | 1141803 - 1143095 | 48974.5 |
| rrna maturation rnase ybey | SD1D_RS05260 | Not Available | Positive | 1143120 - 1143617 | 18993.3 |
| duf3048 domain-containing protein | SD1D_RS05265 | Not Available | Positive | 1143675 - 1144751 | 41317.9 |
| polysaccharide biosynthesis protein | SD1D_RS05270 | Not Available | Positive | 1144832 - 1146517 | 61472.9 |
| hypothetical protein | SD1D_RS05275 | Not Available | Positive | 1146595 - 1147296 | 26888.6 |
| nad(p)/fad-dependent oxidoreductase | SD1D_RS05280 | Not Available | Positive | 1147490 - 1148719 | 45324.1 |
| glutamate 5-kinase | SD1D_RS05285 | Not Available | Positive | 1148753 - 1149604 | 31211.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
