Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heat-inducible transcriptional repressor hrca | SD1D_RS05140 | Not Available | Positive | 1117584 - 1118615 | 38989.3 |
| nucleotide exchange factor grpe | SD1D_RS05145 | Not Available | Positive | 1118679 - 1119380 | 26932.4 |
| molecular chaperone dnak | SD1D_RS05150 | Not Available | Positive | 1119438 - 1121297 | 66442.6 |
| molecular chaperone dnaj | SD1D_RS05155 | Not Available | Positive | 1121473 - 1122615 | 41707.1 |
| 50s ribosomal protein l11 methyltransferase | SD1D_RS05160 | Not Available | Positive | 1122636 - 1123628 | 36651.9 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | SD1D_RS05165 | Not Available | Positive | 1123770 - 1124510 | 27728.0 |
| gtp pyrophosphokinase family protein | SD1D_RS05170 | Not Available | Positive | 1124569 - 1125372 | 31541.2 |
| rsmf rrna methyltransferase first c-terminal domain-containing protein | SD1D_RS05175 | Not Available | Positive | 1125387 - 1126814 | 54464.4 |
| pseudouridine synthase | SD1D_RS05180 | Not Available | Positive | 1126814 - 1127551 | 27843.2 |
| had family hydrolase | SD1D_RS05185 | Not Available | Positive | 1127563 - 1128210 | 25085.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
