Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit omega | SD1D_RS05090 | Not Available | Positive | 1106628 - 1106882 | 9481.43 |
| signal peptidase i | SD1D_RS05095 | Not Available | Positive | 1107122 - 1107676 | 21356.8 |
| dna polymerase iii subunit delta | SD1D_RS05100 | Not Available | Positive | 1107761 - 1108738 | 37278.2 |
| Trna-ser | Not Available | Not Available | Positive | 1108757 - 1108842 | Not Available |
| ycdb/ycdc domain-containing protein | SD1D_RS05110 | Not Available | Positive | 1108981 - 1111227 | 86406.9 |
| 30s ribosomal protein s20 | SD1D_RS05115 | Not Available | Negative | 1111331 - 1111594 | 9556.94 |
| gpr endopeptidase | SD1D_RS05120 | Not Available | Positive | 1111864 - 1112781 | 33509.1 |
| stage ii sporulation protein p | SD1D_RS05125 | Not Available | Positive | 1112856 - 1114196 | 51334.6 |
| translation elongation factor 4 | SD1D_RS05130 | Not Available | Positive | 1114347 - 1116158 | 67606.0 |
| radical sam family heme chaperone hemw | SD1D_RS05135 | Not Available | Positive | 1116187 - 1117440 | 48227.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
