Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ger(x)c family spore germination protein | SD1D_RS04990 | Not Available | Positive | 1088943 - 1090052 | 42292.8 |
| hypothetical protein | SD1D_RS04995 | Not Available | Positive | 1090072 - 1090260 | 7177.42 |
| gerab/arcd/proy family transporter | SD1D_RS05000 | Not Available | Positive | 1090270 - 1091370 | 42303.1 |
| m23 family metallopeptidase | SD1D_RS05005 | Not Available | Negative | 1091374 - 1092480 | 43370.5 |
| duf421 domain-containing protein | SD1D_RS05010 | Not Available | Negative | 1092542 - 1093252 | 26957.4 |
| ferredoxin | SD1D_RS05015 | Not Available | Positive | 1093458 - 1093649 | 6901.02 |
| metallophosphoesterase | SD1D_RS05020 | Not Available | Negative | 1093765 - 1094676 | 35155.1 |
| duf4474 domain-containing protein | SD1D_RS05025 | Not Available | Negative | 1094681 - 1095709 | 40115.3 |
| fad:protein fmn transferase | SD1D_RS05030 | Not Available | Negative | 1095908 - 1096984 | 40103.2 |
| electron transport complex subunit rsxc | SD1D_RS05035 | Not Available | Positive | 1097271 - 1098626 | 48959.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
