Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rubrerythrin | SD1D_RS04940 | Not Available | Positive | 1075896 - 1076489 | 22794.9 |
| nad(p)h-dependent flavin oxidoreductase | SD1D_RS04945 | Not Available | Positive | 1076805 - 1077857 | 38244.0 |
| nadp-dependent phosphogluconate dehydrogenase | SD1D_RS04950 | Not Available | Positive | 1078122 - 1079531 | 52566.2 |
| glucose-6-phosphate dehydrogenase | SD1D_RS04955 | Not Available | Positive | 1079605 - 1081113 | 58087.1 |
| cyclase family protein | SD1D_RS04960 | Not Available | Positive | 1081139 - 1081783 | 24066.0 |
| degv family protein | SD1D_RS04965 | Not Available | Positive | 1081999 - 1082850 | 31233.0 |
| duf3787 domain-containing protein | SD1D_RS04970 | Not Available | Positive | 1083048 - 1083242 | 7383.43 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | SD1D_RS04975 | Not Available | Positive | 1083257 - 1086802 | 131587.0 |
| duf6514 family protein | SD1D_RS04980 | Not Available | Positive | 1087068 - 1087343 | 10442.7 |
| spore germination protein | SD1D_RS04985 | Not Available | Positive | 1087495 - 1088946 | 53948.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
