Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS07715 | Not Available | Negative | 1651734 - 1651916 | 7163.87 |
| p27 family phage terminase small subunit | SD1D_RS07720 | Not Available | Negative | 1651916 - 1652467 | 20663.9 |
| Putative class i holin | SD1D_RS07725 | Not Available | Negative | 1652691 - 1653050 | 14142.7 |
| hypothetical protein | SD1D_RS07730 | Not Available | Negative | 1653186 - 1653416 | 8791.61 |
| Attr | Not Available | Not Available | Positive | 1653491 - 1653503 | Not Available |
| hypothetical protein | SD1D_RS07735 | Not Available | Negative | 1653543 - 1653998 | 17575.9 |
| Vrr-nuc domain-containing protein | SD1D_RS07740 | Not Available | Negative | 1654090 - 1654392 | 10883.6 |
| Hypothetical protein | SD1D_RS07745 | Not Available | Negative | 1654694 - 1655647 | 36155.2 |
| Transposase | SD1D_RS07755 | Not Available | Negative | 1656068 - 1657270 | 45934.2 |
| chromosomal replication initiator protein dnaa | SD1D_RS00005 | Not Available | Positive | 1 - 1350 | 51630.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
