Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | SD1D_RS04840 | Not Available | Positive | 1053270 - 1054256 | 37391.6 |
| carbohydrate abc transporter permease | SD1D_RS04845 | Not Available | Positive | 1054246 - 1055094 | 31928.1 |
| 50s ribosomal protein l25 | SD1D_RS04850 | Not Available | Positive | 1055385 - 1056002 | 23034.3 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | SD1D_RS04855 | Not Available | Positive | 1056342 - 1057709 | 52719.1 |
| simpl domain-containing protein | SD1D_RS04860 | Not Available | Negative | 1057714 - 1058349 | 23442.2 |
| had family hydrolase | SD1D_RS04865 | Not Available | Positive | 1058462 - 1059175 | 27082.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | SD1D_RS04870 | Not Available | Negative | 1059259 - 1059762 | 17665.8 |
| hypothetical protein | SD1D_RS04875 | Not Available | Positive | 1060098 - 1060673 | 22684.5 |
| cation-translocating p-type atpase | SD1D_RS04880 | Not Available | Negative | 1060746 - 1063436 | 97725.2 |
| mechanosensitive ion channel family protein | SD1D_RS04885 | Not Available | Positive | 1063700 - 1064974 | 48689.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
