Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ftsk/spoiiie family dna translocase | SD1D_RS04640 | Not Available | Positive | 1008376 - 1011024 | 96862.1 |
| rimk family alpha-l-glutamate ligase | SD1D_RS04645 | Not Available | Positive | 1011080 - 1011949 | 32625.4 |
| rimk family alpha-l-glutamate ligase | SD1D_RS04650 | Not Available | Positive | 1011998 - 1012918 | 35174.5 |
| had family hydrolase | SD1D_RS04655 | Not Available | Negative | 1013036 - 1013689 | 24371.1 |
| formate--tetrahydrofolate ligase | SD1D_RS04660 | Not Available | Positive | 1013865 - 1015535 | 60084.1 |
| superoxide dismutase | SD1D_RS04665 | Not Available | Positive | 1015663 - 1016244 | 22636.9 |
| aspartate carbamoyltransferase regulatory subunit | SD1D_RS04670 | Not Available | Negative | 1016310 - 1016747 | 16353.3 |
| aspartate carbamoyltransferase | SD1D_RS04675 | Not Available | Negative | 1016741 - 1017673 | 34781.2 |
| dead/deah box helicase | SD1D_RS04680 | Not Available | Positive | 1017965 - 1021189 | 124384.0 |
| biotin transporter bioy | SD1D_RS04685 | Not Available | Negative | 1021292 - 1021873 | 20943.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
