Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad/nadp-dependent octopine/nopaline dehydrogenase family protein | SD1D_RS04490 | Not Available | Negative | 974643 - 975716 | 40285.9 |
| sugar-transfer associated atp-grasp domain-containing protein | SD1D_RS04495 | Not Available | Negative | 975738 - 976850 | 42435.8 |
| methyl-accepting chemotaxis protein | SD1D_RS04500 | Not Available | Positive | 977462 - 979264 | 65960.5 |
| amino acid abc transporter substrate-binding protein | SD1D_RS04505 | Not Available | Positive | 979422 - 980327 | 33026.9 |
| amino acid abc transporter permease | SD1D_RS04510 | Not Available | Positive | 980676 - 981335 | 24854.2 |
| amino acid abc transporter atp-binding protein | SD1D_RS04515 | Not Available | Positive | 981359 - 982117 | 28166.5 |
| ribosome maturation factor rimp | SD1D_RS04520 | Not Available | Positive | 982251 - 982718 | 18173.6 |
| transcription termination factor nusa | SD1D_RS04525 | Not Available | Positive | 982996 - 984042 | 38641.3 |
| rnase p modulator rnpm | SD1D_RS04530 | Not Available | Positive | 984057 - 984344 | 10632.3 |
| l7ae/l30e/s12e/gadd45 family ribosomal protein | SD1D_RS04535 | Not Available | Positive | 984316 - 984630 | 11459.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
