Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | SD1D_RS04440 | Not Available | Negative | 964887 - 965615 | 27505.9 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | SD1D_RS04445 | Not Available | Positive | 965853 - 966539 | 25802.4 |
| response regulator transcription factor | SD1D_RS04450 | Not Available | Positive | 966651 - 967352 | 26373.5 |
| sensor histidine kinase | SD1D_RS04455 | Not Available | Positive | 967327 - 969252 | 74100.8 |
| nadph-dependent oxidoreductase | SD1D_RS04460 | Not Available | Positive | 969406 - 970173 | 29320.4 |
| glucose-1-phosphate thymidylyltransferase rfba | SD1D_RS04465 | Not Available | Positive | 970195 - 971073 | 32606.0 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | SD1D_RS04470 | Not Available | Positive | 971110 - 971661 | 21349.1 |
| dtdp-glucose 4,6-dehydratase | SD1D_RS04475 | Not Available | Positive | 971877 - 972896 | 38959.4 |
| hypothetical protein | SD1D_RS04480 | Not Available | Positive | 973035 - 973277 | 9653.85 |
| aec family transporter | SD1D_RS04485 | Not Available | Positive | 973604 - 974584 | 36486.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
