Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenyl transferase | SD1D_RS04390 | Not Available | Positive | 950093 - 950809 | 27743.3 |
| phosphatidate cytidylyltransferase | SD1D_RS04395 | Not Available | Positive | 950882 - 951679 | 29322.2 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | SD1D_RS04400 | Not Available | Positive | 951794 - 952954 | 42321.9 |
| rip metalloprotease rsep | SD1D_RS04405 | Not Available | Positive | 952987 - 954282 | 47720.6 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | SD1D_RS04410 | Not Available | Positive | 954362 - 955417 | 37800.3 |
| polc-type dna polymerase iii | SD1D_RS04415 | Not Available | Positive | 955531 - 960060 | 170941.0 |
| Trna-glu | Not Available | Not Available | Positive | 960157 - 960228 | Not Available |
| abc transporter permease | SD1D_RS04425 | Not Available | Negative | 960427 - 963027 | 98661.2 |
| abc transporter atp-binding protein | SD1D_RS04430 | Not Available | Negative | 963024 - 963707 | 24969.0 |
| sensor histidine kinase | SD1D_RS04435 | Not Available | Negative | 963856 - 964860 | 38271.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
