Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp4, phage portal protein, hk97 family | SD1D_RS07665 | Not Available | Negative | 1643041 - 1644363 | 49085.8 |
| Terminase large subunit | SD1D_RS07670 | Not Available | Negative | 1644360 - 1646012 | 63056.6 |
| duf5049 domain-containing protein | SD1D_RS07675 | Not Available | Negative | 1646067 - 1646261 | 7562.17 |
| Gp514 | SD1D_RS07680 | Not Available | Negative | 1646265 - 1646732 | 17438.1 |
| Amidoligase family protein | SD1D_RS07685 | Not Available | Negative | 1646797 - 1647696 | 34165.0 |
| Hypothetical protein | SD1D_RS07690 | Not Available | Negative | 1647838 - 1648068 | 8463.1 |
| duf6329 domain-containing protein | SD1D_RS07695 | Not Available | Negative | 1648065 - 1648400 | 13170.7 |
| virulence factor | SD1D_RS07700 | Not Available | Negative | 1648393 - 1649085 | 25599.5 |
| Dna modification methylase | SD1D_RS07705 | Not Available | Negative | 1649202 - 1650455 | 47413.9 |
| Dna modification methylase | SD1D_RS07710 | Not Available | Negative | 1650461 - 1651759 | 49615.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
