Nocardia farcinica strain NCTC11134

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia farcinica strain NCTC11134 is a Gram-positive, non-motile bacterium characterized by its filamentous cell arrangement and cocci shape. This organism is an aerobic chemoheterotroph, thriving in soil environments. It is classified as mesophilic, with an optimal growth temperature of 37°C. N. farcinica is notable for its pathogenicity in humans, with documented health effects including bacteremia, brain abscesses, severe pneumonia, and disseminated nocardiosis. The bacterium can cause localized or disseminated purulent or granulomatous lesions and has been associated with life-threatening infections, particularly affecting the central nervous system and causing spinal osteomyelitis. This strain has also been reported to affect Bos taurus, indicating its potential impact on livestock health. With a single replicon and one membrane, N. farcinica is free-living, suggesting its ecological role in nutrient cycling within soil microbiomes. Its pathogenic potential underscores the importance of understanding environmental microbes, especially those that can transition to pathogenic forms in hosts like Homo sapiens. The presence of this bacterium in soil highlights the interconnectedness of environmental health and human health, pointing to the need for vigilance in managing soil-dwelling pathogens that can lead to serious infections.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia farcinica
Strainstrain NCTC11134

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Nocardia farcinica strain NCTC11134
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Homo sapiens, Bos taurus
Cell arrangementFilaments
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Nocardia farcinica strain NCTC11134


Gene Summary

Adenine Count

2410 bp

Thymine Count

2711 bp

Guanine Count

5165 bp

Cytosine Count

4804 bp

Genome Length

15090 bp

Protein-coding Genes

24 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6879 family proteinAMO33_RS29315Not AvailableNegative8202 - 871719722.8
hypothetical proteinAMO33_RS29320Not AvailableNegative8686 - 902712239.5
helix-turn-helix domain-containing proteinAMO33_RS33065Not AvailablePositive9294 - 95609567.67
hypothetical proteinAMO33_RS29325Not AvailablePositive9557 - 97577008.45
hypothetical proteinAMO33_RS31940Not AvailablePositive9754 - 100239660.79
hypothetical proteinAMO33_RS29330Not AvailableNegative10077 - 1041512772.4
duf4326 domain-containing proteinAMO33_RS32770Not AvailableNegative10468 - 105844112.96
hypothetical proteinAMO33_RS33070Not AvailableNegative10571 - 107747538.9
glutaredoxin family proteinAMO33_RS29335Not AvailableNegative10865 - 1117611070.3
hypothetical proteinAMO33_RS29340Not AvailableNegative11173 - 1159815053.8

Displaying genes 11 – 20 of 24 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

35 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002147N-ethylsuccinimideC6H9NO2Chemical structure of N-ethylsuccinimide2314-78-5
Average127.1412Da
Monoisotopic127.0633285Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002655octadecanoyl-CoAC39H66N7O17P3SChemical structure of octadecanoyl-CoANot available
Average1029.97Da
Monoisotopic1029.347070181Da

Displaying 1–10 of 35 metabolites

Health Effects

Health ConditionRelationReference
Disseminated nocardiosisCausesPMC9112502
NocardiosisCausesPMC9850167
Disseminated life-threatening infectionsCausesPMC11994016
Disseminated infectionsCausesPMC11994016
Central nervous system infectionCausesPMC11994016
Brain abscessCausesPMC11994016
Disseminated infectionCausesPMC11994016
Severe pneumoniaCausesPMC11994016
BacteremiaCausesPMC12139244
Localized or disseminated purulent or granulomatous lesionsCausesPMC12419247

Displaying health effects 1 – 10 of 15 in total