Mycolicibacterium smegmatis strain NCTC8159

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycolicibacterium

Description

Mycolicibacterium smegmatis strain NCTC8159 is a Gram-positive, rod-shaped bacterium that primarily inhabits host-associated environments, particularly associated with Homo sapiens. This species is classified as a chemoorganotroph, utilizing organic compounds as energy sources. It is strictly aerobic, requiring oxygen for its metabolic processes, and exhibits a mesophilic temperature range with an optimal growth temperature of 37°C. This bacterium is characterized by its single-cell arrangement and lacks mobility, as it does not possess flagella. M. smegmatis strain NCTC8159 has a unique cellular structure, featuring one membrane and a singular replicon. It is recognized for its free-living biotic relationship, which indicates that it can thrive independently in its environment. While M. smegmatis itself is generally considered non-pathogenic, it has been associated with health effects in humans, notably the development of ulcers. This indicates that while the organism may be part of the normal microbiota, it can also play a role in pathogenic processes under certain conditions. The ecological insight derived from understanding M. smegmatis is its adaptability to the human host environment, where it can exist as a free-living organism while also having the potential to impact human health. Its ability to utilize organic materials in the presence of oxygen suggests a role in nutrient cycling within host-associated habitats, potentially influencing the microbial composition and health of those environments. The accession number for this strain is NZ_LN831039.1, providing a resource for further genetic and functional studies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium smegmatis
Strainstrain NCTC8159

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Mycolicibacterium smegmatis strain NCTC8159
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Mycolicibacterium smegmatis strain NCTC8159


Gene Summary

Adenine Count

1142177 bp

Thymine Count

1139335 bp

Guanine Count

2348832 bp

Cytosine Count

2352923 bp

Genome Length

6983267 bp

Protein-coding Genes

6634 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinAT701_RS05735Not AvailablePositive1227703 - 122815517318.5
Terminase large subunitAT701_RS05740Q9F5P4Positive1228148 - 1230961103715.0
Portal proteinAT701_RS05745O64207Positive1230958 - 123239753609.8
Capsid maturation proteaseAT701_RS05750Not AvailablePositive1232401 - 123309025843.2
Hypothetical proteinAT701_RS05755Not AvailablePositive1233132 - 123361417645.5
Major capsid proteinAT701_RS05760O64210Positive1233646 - 123454831539.3
Hypothetical proteinAT701_RS05765Not AvailablePositive1234568 - 123494513583.1
Hypothetical proteinAT701_RS05770Not AvailablePositive1235071 - 12352807653.11
Hypothetical proteinAT701_RS05775Not AvailablePositive1235280 - 123555510209.9
Minor tail proteinAT701_RS05780Not AvailablePositive1235558 - 123594713852.8

Displaying genes 1 – 10 of 6710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

546 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da

Displaying 1–10 of 546 metabolites

Health Effects

Health ConditionRelationReference
UlcersCausesPMC9903526

Displaying health effects 1 – 1 of 1 in total