Helicobacter pylori strain 1198/04

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 1198/04 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and presence of flagella. It exhibits a single-cell arrangement and is classified as mesophilic, with an optimal growth temperature of 37°C. This strain is notable for its biotic relationships, as it is free-living yet primarily associated with various hosts, including Homo sapiens, Gallus gallus, other avian species, primates, mammals, amoebas, and rodents. The strain possesses two replicons and two membranes, which may contribute to its adaptability in different environments. H. pylori strain 1198/04 is associated with a range of serious health effects, including chronic gastric inflammation, gastric cancer, and various forms of ulcers, such as gastric and duodenal ulcers. Additionally, it is linked to conditions such as gastroesophageal reflux disease (GERD), gastritis, and mucosa-associated lymphoid tissue (MALT) lymphoma. The pathogenicity of H. pylori strain 1198/04 highlights its role in gastrointestinal diseases, particularly in humans, where it is a major contributing factor to peptic ulcer disease and gastric carcinogenesis. The association with chronic conditions such as atrophic gastritis and intestinal metaplasia underlines the strain's potential impact on long-term health outcomes. This evidence emphasizes the ecological significance of H. pylori as both a commensal organism in certain hosts and a notable pathogen in humans, shaping its ecological niche and influencing host health dynamics.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain 1198/04

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain 1198/04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain 1198/04


Gene Summary

Adenine Count

492645 bp

Thymine Count

495317 bp

Guanine Count

312626 bp

Cytosine Count

317727 bp

Genome Length

1618345 bp

Protein-coding Genes

1485 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lon proteaseHPY1198_00040Not AvailableNegative8754 - 1128895224.9
competence protein comlHPY1198_00045Not AvailableNegative11331 - 1199326235.8
flagellar assembly protein fliwHPY1198_00050Not AvailablePositive12396 - 1278514833.3
3-hydroxyacyl-acp dehydrataseHPY1198_00055Not AvailablePositive12966 - 1344518197.3
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive13074 - 13389Not Available
udp-n-acetylglucosamine acyltransferaseHPY1198_00060Not AvailablePositive13448 - 1426029857.2
clp protease clpxHPY1198_00065Not AvailablePositive14262 - 1560850637.6
rod shape-determining protein mrebHPY1198_00070Not AvailablePositive15651 - 1669437341.9
rod shape-determining protein mrecHPY1198_00075Not AvailablePositive16698 - 1744428003.9
restriction endonuclease subunit rHPY1198_00080Not AvailableNegative17495 - 20386113236.0

Displaying genes 11 – 20 of 1527 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

135 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 135 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total