Candidatus Phaeomarinobacter ectocarpi strain Ec32

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Candidatus Phaeomarinibacter

Description

Candidatus Phaeomarinobacter ectocarpi strain Ec32 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can be significant in understanding its genetic stability and adaptability in various environments. The strain is documented under the accession number NZ_HG966617.1, which provides a reference for its genomic sequence in biological databases. The simplicity of having one replicon may suggest a specialization that allows Candidatus Phaeomarinobacter ectocarpi strain Ec32 to thrive in specific ecological niches, potentially including marine environments associated with ectocarpus algae. Such a habitat could also imply a role in nutrient cycling, particularly in coastal or marine ecosystems where ectocarpus is prevalent. Understanding the genomic characteristics of Candidatus Phaeomarinobacter ectocarpi strain Ec32 may shed light on its ecological interactions and functional capabilities within its habitat. The presence of a singular replicon might enhance its efficiency in resource utilization, enabling it to respond to environmental changes effectively. This could also pose implications for its role in symbiotic relationships with marine organisms, where such traits could influence nutrient exchange and overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusCandidatus Phaeomarinibacter
SpeciesCandidatus Phaeomarinibacter ectocarpi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Phaeomarinobacter ectocarpi strain Ec32 chromosome I.

Gene Summary

Adenine Count

720634 bp

Thymine Count

683548 bp

Guanine Count

971016 bp

Cytosine Count

1038542 bp

Genome Length

3415905 bp

Protein-coding Genes

3217 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeBN1012_RS15755Not AvailableNegative3282742 - 328407946573.2
duf6489 family proteinBN1012_RS15760Not AvailableNegative3284098 - 328441511462.9
thioredoxin domain-containing proteinBN1012_RS15765Not AvailablePositive3284494 - 328651874645.7
dienelactone hydrolase family proteinBN1012_RS15770Not AvailablePositive3286679 - 328737725307.9
quinone oxidoreductase family proteinBN1012_RS15775Not AvailablePositive3287469 - 328844333726.6
pas domain-containing proteinBN1012_RS15780Not AvailableNegative3288468 - 328913924551.2
pas domain-containing proteinBN1012_RS15785Not AvailableNegative3289265 - 328983420812.8
pas domain-containing proteinBN1012_RS15790Not AvailableNegative3289893 - 329057024653.0
transcription termination factor rhoBN1012_RS15795Not AvailableNegative3290640 - 329190547033.5
protoporphyrinogen oxidase hemjBN1012_RS15800Not AvailableNegative3292368 - 329281417099.7

Displaying genes 3161 – 3170 of 3292 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.