Candidatus Phaeomarinobacter ectocarpi strain Ec32

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Candidatus Phaeomarinibacter

Description

Candidatus Phaeomarinobacter ectocarpi strain Ec32 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can be significant in understanding its genetic stability and adaptability in various environments. The strain is documented under the accession number NZ_HG966617.1, which provides a reference for its genomic sequence in biological databases. The simplicity of having one replicon may suggest a specialization that allows Candidatus Phaeomarinobacter ectocarpi strain Ec32 to thrive in specific ecological niches, potentially including marine environments associated with ectocarpus algae. Such a habitat could also imply a role in nutrient cycling, particularly in coastal or marine ecosystems where ectocarpus is prevalent. Understanding the genomic characteristics of Candidatus Phaeomarinobacter ectocarpi strain Ec32 may shed light on its ecological interactions and functional capabilities within its habitat. The presence of a singular replicon might enhance its efficiency in resource utilization, enabling it to respond to environmental changes effectively. This could also pose implications for its role in symbiotic relationships with marine organisms, where such traits could influence nutrient exchange and overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusCandidatus Phaeomarinibacter
SpeciesCandidatus Phaeomarinibacter ectocarpi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Phaeomarinobacter ectocarpi strain Ec32 chromosome I.

Gene Summary

Adenine Count

720634 bp

Thymine Count

683548 bp

Guanine Count

971016 bp

Cytosine Count

1038542 bp

Genome Length

3415905 bp

Protein-coding Genes

3217 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-n-acetylmuramoyl-pentapeptide- transferaseBN1012_RS10435Not AvailableNegative2159735 - 216082338487.3
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseBN1012_RS10440Not AvailableNegative2160823 - 216227750766.9
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseBN1012_RS10445Not AvailableNegative2162283 - 216374950713.4
peptidoglycan d,d-transpeptidase ftsi family proteinBN1012_RS10450Not AvailableNegative2163754 - 216553263455.3
hypothetical proteinBN1012_RS10455Not AvailableNegative2165546 - 216590512960.8
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhBN1012_RS10460Not AvailableNegative2165902 - 216698438260.5
division/cell wall cluster transcriptional repressor mrazBN1012_RS10465Not AvailableNegative2166981 - 216750518795.4
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive2167877 - 2168356Not Available
zinc-binding alcohol dehydrogenase family proteinBN1012_RS10470Not AvailablePositive2168434 - 216943835760.9
n-acetylmuramoyl-l-alanine amidaseBN1012_RS10475Not AvailableNegative2169428 - 217017126539.0

Displaying genes 2091 – 2100 of 3292 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.