Candidatus Phaeomarinobacter ectocarpi strain Ec32

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Candidatus Phaeomarinibacter

Description

Candidatus Phaeomarinobacter ectocarpi strain Ec32 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can be significant in understanding its genetic stability and adaptability in various environments. The strain is documented under the accession number NZ_HG966617.1, which provides a reference for its genomic sequence in biological databases. The simplicity of having one replicon may suggest a specialization that allows Candidatus Phaeomarinobacter ectocarpi strain Ec32 to thrive in specific ecological niches, potentially including marine environments associated with ectocarpus algae. Such a habitat could also imply a role in nutrient cycling, particularly in coastal or marine ecosystems where ectocarpus is prevalent. Understanding the genomic characteristics of Candidatus Phaeomarinobacter ectocarpi strain Ec32 may shed light on its ecological interactions and functional capabilities within its habitat. The presence of a singular replicon might enhance its efficiency in resource utilization, enabling it to respond to environmental changes effectively. This could also pose implications for its role in symbiotic relationships with marine organisms, where such traits could influence nutrient exchange and overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusCandidatus Phaeomarinibacter
SpeciesCandidatus Phaeomarinibacter ectocarpi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Phaeomarinobacter ectocarpi strain Ec32 chromosome I.

Gene Summary

Adenine Count

720634 bp

Thymine Count

683548 bp

Guanine Count

971016 bp

Cytosine Count

1038542 bp

Genome Length

3415905 bp

Protein-coding Genes

3217 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bola family proteinBN1012_RS09440Not AvailablePositive1947426 - 19476598217.93
grx4 family monothiol glutaredoxinBN1012_RS09445Not AvailablePositive1947685 - 194803212820.3
hypothetical proteinBN1012_RS09450Not AvailableNegative1948048 - 194855118047.7
tetr/acrr family transcriptional regulatorBN1012_RS09455Not AvailableNegative1948594 - 194917520572.7
zinc-dependent alcohol dehydrogenaseBN1012_RS09460Not AvailablePositive1949282 - 195032236724.1
30s ribosomal protein s4BN1012_RS09465Not AvailableNegative1950383 - 195100023727.6
mfs transporterBN1012_RS09470Not AvailableNegative1951213 - 195251145036.2
rna methyltransferaseBN1012_RS09475Not AvailableNegative1952508 - 195335931201.1
nadp-dependent isocitrate dehydrogenaseBN1012_RS09480Not AvailablePositive1953602 - 195482545721.5
cyclic nucleotide-gated ion channelBN1012_RS09485Not AvailableNegative1954860 - 195609545643.9

Displaying genes 1891 – 1900 of 3292 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.