Candidatus Phaeomarinobacter ectocarpi strain Ec32

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Candidatus Phaeomarinibacter

Description

Candidatus Phaeomarinobacter ectocarpi strain Ec32 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can be significant in understanding its genetic stability and adaptability in various environments. The strain is documented under the accession number NZ_HG966617.1, which provides a reference for its genomic sequence in biological databases. The simplicity of having one replicon may suggest a specialization that allows Candidatus Phaeomarinobacter ectocarpi strain Ec32 to thrive in specific ecological niches, potentially including marine environments associated with ectocarpus algae. Such a habitat could also imply a role in nutrient cycling, particularly in coastal or marine ecosystems where ectocarpus is prevalent. Understanding the genomic characteristics of Candidatus Phaeomarinobacter ectocarpi strain Ec32 may shed light on its ecological interactions and functional capabilities within its habitat. The presence of a singular replicon might enhance its efficiency in resource utilization, enabling it to respond to environmental changes effectively. This could also pose implications for its role in symbiotic relationships with marine organisms, where such traits could influence nutrient exchange and overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusCandidatus Phaeomarinibacter
SpeciesCandidatus Phaeomarinibacter ectocarpi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Phaeomarinobacter ectocarpi strain Ec32 chromosome I.

Gene Summary

Adenine Count

720634 bp

Thymine Count

683548 bp

Guanine Count

971016 bp

Cytosine Count

1038542 bp

Genome Length

3415905 bp

Protein-coding Genes

3217 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation elongation factor tsBN1012_RS05895Not AvailablePositive1254001 - 125492732156.2
ump kinaseBN1012_RS05900Not AvailablePositive1255065 - 125579025891.5
ribosome recycling factorBN1012_RS05905Not AvailablePositive1255848 - 125641720165.2
isoprenyl transferaseBN1012_RS05910Not AvailablePositive1256491 - 125730030259.9
phosphatidate cytidylyltransferaseBN1012_RS05915Not AvailablePositive1257282 - 125819331191.6
1-deoxy-d-xylulose-5-phosphate reductoisomeraseBN1012_RS05920Not AvailablePositive1258190 - 125940742368.6
rip metalloprotease rsepBN1012_RS05925Not AvailablePositive1259479 - 126062741454.3
outer membrane protein assembly factor bamaBN1012_RS05930Not AvailablePositive1260710 - 126309788088.8
omph family outer membrane proteinBN1012_RS05935Not AvailablePositive1263100 - 126366920782.1
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseBN1012_RS05940Not AvailablePositive1263736 - 126477335334.1

Displaying genes 1181 – 1190 of 3292 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.