Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Janthinobacterium

Description

Janthinobacterium agaricidamnosum NBRC 102515, also known as DSM 9628, is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism exhibits mobility, which is attributed to the presence of flagella. It contains a single replicon, indicating a streamlined genomic structure. The accession number NZ_HG322949.1 is associated with its genetic information, reflecting the organism's specific genomic characteristics. Janthinobacterium agaricidamnosum is notable for its ecological role, particularly in association with fungi, where it has been observed to exhibit antifungal properties. This interaction suggests a potential for biocontrol applications in agriculture or environmental management, particularly in reducing fungal pathogens. Overall, the traits of Janthinobacterium agaricidamnosum highlight its adaptability and significance in microbial ecology, especially concerning its interactions with other organisms in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusJanthinobacterium
SpeciesJanthinobacterium agaricidamnosum
StrainNBRC 102515 = DSM 9628

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628

Gene Summary

Adenine Count

1153787 bp

Thymine Count

1161815 bp

Guanine Count

1815854 bp

Cytosine Count

1815888 bp

Genome Length

5949001 bp

Protein-coding Genes

5196 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tsseGJA_RS25020Not AvailableNegative5786320 - 578683519195.0
type vi secretion system tube protein hcpGJA_RS25025Not AvailableNegative5786835 - 578731417132.1
type vi secretion system contractile sheath large subunitGJA_RS25030Not AvailableNegative5787379 - 578888455670.6
type vi secretion system contractile sheath small subunitGJA_RS25035Not AvailableNegative5788915 - 578943018829.7
type vi secretion system protein tssaGJA_RS25040Not AvailableNegative5789578 - 579064838071.5
sigma-70 family rna polymerase sigma factorGJA_RS25045Not AvailablePositive5790931 - 579154523297.8
anti-sigma factor domain-containing proteinGJA_RS25050Not AvailablePositive5791542 - 579227626427.2
superoxide dismutase family proteinGJA_RS25055Not AvailableNegative5792351 - 579289618476.5
hypothetical proteinGJA_RS25060Not AvailablePositive5793215 - 579408730434.6
duf3365 domain-containing proteinGJA_RS25065Not AvailablePositive5794092 - 579497332377.6

Displaying genes 5111 – 5120 of 5280 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.