Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Janthinobacterium

Description

Janthinobacterium agaricidamnosum NBRC 102515, also known as DSM 9628, is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism exhibits mobility, which is attributed to the presence of flagella. It contains a single replicon, indicating a streamlined genomic structure. The accession number NZ_HG322949.1 is associated with its genetic information, reflecting the organism's specific genomic characteristics. Janthinobacterium agaricidamnosum is notable for its ecological role, particularly in association with fungi, where it has been observed to exhibit antifungal properties. This interaction suggests a potential for biocontrol applications in agriculture or environmental management, particularly in reducing fungal pathogens. Overall, the traits of Janthinobacterium agaricidamnosum highlight its adaptability and significance in microbial ecology, especially concerning its interactions with other organisms in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusJanthinobacterium
SpeciesJanthinobacterium agaricidamnosum
StrainNBRC 102515 = DSM 9628

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628

Gene Summary

Adenine Count

1153787 bp

Thymine Count

1161815 bp

Guanine Count

1815854 bp

Cytosine Count

1815888 bp

Genome Length

5949001 bp

Protein-coding Genes

5196 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-amino acid dehydrogenaseGJA_RS13660Not AvailableNegative3215403 - 321672848035.9
lrp/asnc ligand binding domain-containing proteinGJA_RS13665Not AvailablePositive3216798 - 321729218645.8
hypothetical proteinGJA_RS13670Not AvailablePositive3217441 - 321780613252.2
zinc ribbon domain-containing protein yjdmGJA_RS13675Not AvailablePositive3217970 - 321831112196.5
glycerol kinase glpkGJA_RS13680Not AvailableNegative3218328 - 321982454149.7
abc transporter substrate-binding proteinGJA_RS13685Not AvailableNegative3219940 - 322166764231.2
duf2160 domain-containing proteinGJA_RS13690Not AvailableNegative3221743 - 322203610678.4
carbohydrate abc transporter permeaseGJA_RS13695Not AvailableNegative3222039 - 322284229970.4
carbohydrate abc transporter permeaseGJA_RS13700Not AvailableNegative3222842 - 322371132372.4
abc transporter atp-binding proteinGJA_RS13705Not AvailableNegative3223711 - 322479639689.2

Displaying genes 2781 – 2790 of 5280 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.