Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3 is a Gram-positive bacterium characterized by its cocci shape. This strain possesses flagella, which indicates motility and may contribute to its ecological interactions within its habitat. Ruminococcus bicirculans has two replicons, which suggests a complex genomic organization that may facilitate its adaptability and metabolic functions. The strain is cataloged under the following GenBank accessions: NZ_HF545616.1 and NZ_HF545617.1. These accessions provide a means for researchers to access its genomic information, which can be valuable for studies related to its physiology, ecological role, and potential applications in biotechnology or medicine. Biologically, Ruminococcus species are known to inhabit the gastrointestinal tracts of various animals, where they play a crucial role in the fermentation of complex carbohydrates and the maintenance of gut health. The presence of flagella in Ruminococcus bicirculans may enhance its capacity to navigate the gut environment, potentially allowing it to effectively colonize niches and interact with other microbial communities. This motility could be significant in the context of symbiotic relationships with host organisms, contributing to nutrient absorption and overall gut health. The study of Ruminococcus bicirculans strain 80/3 could provide insights into the dynamics of gut microbiota and the metabolic processes that support the health of its host.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus bicirculans (ex Wegman et al. 2014)
Strainstrain 80/3

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3

Gene Summary

Adenine Count

207485 bp

Thymine Count

207315 bp

Guanine Count

162940 bp

Cytosine Count

149883 bp

Genome Length

727623 bp

Protein-coding Genes

617 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinRBI_RS07205Not AvailableNegative1575113 - 157564919808.5
nfed family proteinRBI_RS07210Not AvailablePositive1575865 - 157653323802.7
flotillin family proteinRBI_RS07215Not AvailablePositive1576630 - 157809052657.2
anaerobic ribonucleoside-triphosphate reductase activating proteinRBI_RS07220Not AvailableNegative1578164 - 157867918897.5
anaerobic ribonucleoside triphosphate reductaseRBI_RS07225Not AvailableNegative1578682 - 158094084577.8
hypothetical proteinRBI_RS07230Not AvailableNegative1581356 - 15815537337.69
asparagine synthase (glutamine-hydrolyzing)RBI_RS07235Not AvailablePositive1581837 - 158367270450.9
nfed family proteinRBI_RS07240Not AvailablePositive1583945 - 158438815928.9
spfh domain-containing proteinRBI_RS07245Not AvailablePositive1584423 - 158539735900.0
hypothetical proteinRBI_RS07250Not AvailableNegative1585944 - 158651322360.8

Displaying genes 2201 – 2210 of 2831 in total

Metabolites

182 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 182 metabolites

Health Effects

No health effects information available for this bacterium.