Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus bicirculans (ex Wegman et al. 2014)
Strainstrain 80/3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3


Gene Summary

Adenine Count

207485 bp

Thymine Count

207315 bp

Guanine Count

162940 bp

Cytosine Count

149883 bp

Genome Length

727623 bp

Protein-coding Genes

617 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Phage tail length tape-measure proteinRBI_RS13150Not Available-595582 - 598545106653.0
Hypothetical proteinRBI_RS14660Not Available+598622 - 59929924404.2
Hypothetical proteinRBI_RS13160Not Available-599332 - 59988921418.7
hypothetical proteinRBI_RS13165Not Available-599886 - 60038018690.0
hypothetical proteinRBI_RS13170Not Available-600424 - 60092718340.8
Hypothetical proteinRBI_RS13175Not Available-600928 - 60135916387.9
Minor capsid proteinRBI_RS13180Not Available-601343 - 60171413637.7
duf6751 family proteinRBI_RS13185Not Available-601711 - 60203712204.5
Hypothetical proteinRBI_RS13190Not Available-602038 - 60235811890.7
Hypothetical proteinRBI_RS13195Not Available-602362 - 6025988435.9

Displaying genes 1 – 10 of 2831 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

182 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 182 metabolites