Agrobacterium tumefaciens strain CFBP5506

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP5506 is a Gram-negative, rod-shaped bacterium classified as an aerobe, which means it requires oxygen for growth. This strain is motile and possesses flagella, enabling movement in its environment. It thrives optimally at a temperature of 25°C and is categorized as mesophilic, indicating it grows best in moderate temperature ranges. This bacterium exhibits a free-living biotic relationship and can inhabit multiple environments. Notably, it has a single replicon and is characterized by the presence of two membranes, typical of Gram-negative bacteria. Agrobacterium tumefaciens is well-known for its pathogenicity, particularly in causing crown gall disease, which results in the formation of tumors on various plant species. It affects a wide range of hosts within the Viridiplantae kingdom, including economically significant crops such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). Other hosts include Arabidopsis, Glycine max (soybean), and various ornamental plants. The ability of Agrobacterium tumefaciens to induce tumors in host plants highlights its ecological role in plant-pathogen interactions. This relationship can have significant implications for agriculture, as it can lead to reduced crop yields and impact food production systems. Understanding the traits and behaviors of CFBP5506 can inform strategies for managing crown gall disease and mitigating its effects on affected crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP5506

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP5506
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5506 chromosome Linear,

Gene Summary

Adenine Count

386076 bp

Thymine Count

386451 bp

Guanine Count

561882 bp

Cytosine Count

561906 bp

Genome Length

1896315 bp

Protein-coding Genes

1662 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCFBP5506_RS17810Not AvailableNegative1023253 - 102355510711.0
laci family dna-binding transcriptional regulatorCFBP5506_RS17815Not AvailablePositive1023704 - 102474438124.8
sarcosine oxidase subunit gamma family proteinCFBP5506_RS17820Not AvailableNegative1024754 - 102529019220.4
sarcosine oxidase subunit alphaCFBP5506_RS17825Not AvailableNegative1025283 - 1028246105704.0
sarcosine oxidase subunit deltaCFBP5506_RS17830Not AvailableNegative1028243 - 102851810273.0
sarcosine oxidase subunit beta family proteinCFBP5506_RS17835Not AvailableNegative1028596 - 102984645159.9
glxa family transcriptional regulatorCFBP5506_RS17840Not AvailablePositive1029936 - 103091035300.4
helix-turn-helix domain-containing proteinCFBP5506_RS17845Not AvailablePositive1030945 - 103162524945.6
class ii glutamine amidotransferaseCFBP5506_RS17850Not AvailablePositive1031722 - 103262731902.0
gxgxg domain-containing proteinCFBP5506_RS17855Not AvailablePositive1032665 - 103335123697.1

Displaying genes 891 – 900 of 1682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total