Agrobacterium tumefaciens strain CFBP5506

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP5506 is a Gram-negative, rod-shaped bacterium classified as an aerobe, which means it requires oxygen for growth. This strain is motile and possesses flagella, enabling movement in its environment. It thrives optimally at a temperature of 25°C and is categorized as mesophilic, indicating it grows best in moderate temperature ranges. This bacterium exhibits a free-living biotic relationship and can inhabit multiple environments. Notably, it has a single replicon and is characterized by the presence of two membranes, typical of Gram-negative bacteria. Agrobacterium tumefaciens is well-known for its pathogenicity, particularly in causing crown gall disease, which results in the formation of tumors on various plant species. It affects a wide range of hosts within the Viridiplantae kingdom, including economically significant crops such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). Other hosts include Arabidopsis, Glycine max (soybean), and various ornamental plants. The ability of Agrobacterium tumefaciens to induce tumors in host plants highlights its ecological role in plant-pathogen interactions. This relationship can have significant implications for agriculture, as it can lead to reduced crop yields and impact food production systems. Understanding the traits and behaviors of CFBP5506 can inform strategies for managing crown gall disease and mitigating its effects on affected crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP5506

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP5506
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5506 chromosome Linear,

Gene Summary

Adenine Count

386076 bp

Thymine Count

386451 bp

Guanine Count

561882 bp

Cytosine Count

561906 bp

Genome Length

1896315 bp

Protein-coding Genes

1662 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formate dehydrogenase subunit gammaCFBP5506_RS13675Not AvailableNegative71909 - 7238817342.8
lysr family transcriptional regulatorCFBP5506_RS13680Not AvailableNegative72493 - 7342834644.0
aspartate/glutamate racemase family proteinCFBP5506_RS13685Not AvailableNegative73530 - 7425225418.7
flavin reductase family proteinCFBP5506_RS13690Not AvailableNegative74274 - 7490323496.1
gntr family transcriptional regulatorCFBP5506_RS13695Not AvailablePositive75033 - 7571025250.3
abc transporter atp-binding proteinCFBP5506_RS13700Not AvailableNegative75718 - 7674037325.0
abc transporter atp-binding proteinCFBP5506_RS13705Not AvailableNegative76737 - 7772035068.8
amidohydrolase family proteinCFBP5506_RS13710Not AvailableNegative77713 - 7920653922.6
amidohydrolase family proteinCFBP5506_RS13715Not AvailableNegative79206 - 8039942722.8
abc transporter permeaseCFBP5506_RS13720Not AvailableNegative80405 - 8135234171.5

Displaying genes 61 – 70 of 1682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total