Agrobacterium tumefaciens strain CFBP5506

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP5506 is a Gram-negative, rod-shaped bacterium classified as an aerobe, which means it requires oxygen for growth. This strain is motile and possesses flagella, enabling movement in its environment. It thrives optimally at a temperature of 25°C and is categorized as mesophilic, indicating it grows best in moderate temperature ranges. This bacterium exhibits a free-living biotic relationship and can inhabit multiple environments. Notably, it has a single replicon and is characterized by the presence of two membranes, typical of Gram-negative bacteria. Agrobacterium tumefaciens is well-known for its pathogenicity, particularly in causing crown gall disease, which results in the formation of tumors on various plant species. It affects a wide range of hosts within the Viridiplantae kingdom, including economically significant crops such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). Other hosts include Arabidopsis, Glycine max (soybean), and various ornamental plants. The ability of Agrobacterium tumefaciens to induce tumors in host plants highlights its ecological role in plant-pathogen interactions. This relationship can have significant implications for agriculture, as it can lead to reduced crop yields and impact food production systems. Understanding the traits and behaviors of CFBP5506 can inform strategies for managing crown gall disease and mitigating its effects on affected crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP5506

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP5506
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5506 chromosome Linear,

Gene Summary

Adenine Count

386076 bp

Thymine Count

386451 bp

Guanine Count

561882 bp

Cytosine Count

561906 bp

Genome Length

1896315 bp

Protein-coding Genes

1662 genes

Non-Coding Genes

20 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter atp-binding proteinCFBP5506_RS13475Not AvailableNegative20479 - 2196953345.6
substrate-binding domain-containing proteinCFBP5506_RS13480Not AvailableNegative22087 - 2306433989.3
laci family dna-binding transcriptional regulatorCFBP5506_RS13485Not AvailablePositive23303 - 2438239670.2
putative bifunctional diguanylate cyclase/phosphodiesteraseCFBP5506_RS13490Not AvailableNegative24431 - 2575949090.8
tetratricopeptide repeat proteinCFBP5506_RS13495Not AvailablePositive26016 - 2635412256.9
type b chloramphenicol o-acetyltransferaseCFBP5506_RS13500Not AvailableNegative26486 - 2712123628.9
bifunctional aconitate hydratase 2/2-methylisocitrate dehydrataseCFBP5506_RS13505Not AvailableNegative27445 - 30234100619.0
spore coat u domain-containing proteinCFBP5506_RS13510Not AvailablePositive30593 - 3109016530.3
molecular chaperoneCFBP5506_RS13515Not AvailablePositive31112 - 3183124978.0
fimbria/pilus outer membrane usher proteinCFBP5506_RS13520Not AvailablePositive31803 - 3424186852.1

Displaying genes 21 – 30 of 1682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total