Shewanella putrefaciens strain SA70

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella putrefaciens strain SA70 is a Gram-negative bacterium isolated from the mangrove soil of the Sundarbans, a unique and ecologically significant coastal region. This strain is characterized by the presence of flagella, which enable motility and facilitate its adaptation to the dynamic mangrove environment. The genomic structure of S. putrefaciens strain SA70 is notable for containing two replicons, which may play a role in its adaptability and resilience in nutrient-variable habitats. The strain has been associated with the marine mammal Phocoena phocoena, also known as the harbor porpoise, indicating a potential ecological interaction or host relationship that could be explored further. The accession numbers associated with this strain are NZ_CP078038.1 and NZ_CP078039.1, which provide access to its genomic sequences for detailed study. Understanding the genetic makeup and metabolic capabilities of S. putrefaciens strain SA70 can shed light on its ecological roles, particularly in mangrove ecosystems where it may contribute to nutrient cycling and organic matter degradation. In summary, Shewanella putrefaciens strain SA70 exemplifies the adaptive strategies of marine bacteria in specialized habitats like mangrove soils. Its interactions with local fauna, such as the harbor porpoise, highlight the interconnectedness of microbial life and larger ecological systems in coastal environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella putrefaciens
Strainstrain SA70

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmangrove soil; Sundarbans; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Phocoena phocoena
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella putrefaciens strain SA70 plasmid pSA70-2, complete

Gene Summary

Adenine Count

62041 bp

Thymine Count

60849 bp

Guanine Count

53465 bp

Cytosine Count

52568 bp

Genome Length

228923 bp

Protein-coding Genes

228 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
twin-arginine translocase subunit tatcB7D78_RS02040Not AvailableNegative429202 - 42995127776.3
sec-independent protein translocase protein tatbB7D78_RS02045Not AvailableNegative429955 - 43039815889.8
sec-independent protein translocase subunit tataB7D78_RS02050Not AvailableNegative430405 - 4306628986.82
ubiquinone biosynthesis regulatory protein kinase ubibB7D78_RS02055Not AvailableNegative430722 - 43237163276.1
scp2 domain-containing proteinB7D78_RS02060Not AvailableNegative432368 - 43298823538.4
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieB7D78_RS02065Not AvailableNegative432988 - 43374328092.9
formimidoylglutamaseB7D78_RS02070Not AvailableNegative433985 - 43503737585.6
ribonuclease e activity regulator rraaB7D78_RS02075Not AvailableNegative435168 - 43565317047.0
ygjv family proteinB7D78_RS02080Not AvailablePositive435977 - 4362259235.69
phosphatase pap2 family proteinB7D78_RS02085Not AvailablePositive436580 - 43709218519.9

Displaying genes 711 – 720 of 4504 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.