Pseudoalteromonas rubra strain S4059

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S4059 is a marine bacterium characterized by its rod shape and a single replicon. This strain has been isolated from marine sponges, specifically from the host Mycale grandis. The association with marine sponges suggests that P. rubra may play a role in the complex microbial community found within these organisms. The habitat of this strain is significant as it indicates its adaptation to marine environments, which are often rich in biodiversity and complex ecological interactions. The relationship with Mycale grandis could imply a potential symbiotic role, contributing to the health of the sponge or interacting with other microbial inhabitants. The accession number for Pseudoalteromonas rubra strain S4059 is NZ_CP045429.1, which provides a reference for further genomic and taxonomic studies. Understanding the genomic characteristics of this strain could reveal insights into its metabolic capabilities and potential functions within its marine sponge habitat. Overall, the ecological insight that can be drawn from the existence of Pseudoalteromonas rubra strain S4059 is its potential contribution to the sponge microbiome, which is crucial for nutrient cycling and the overall health of marine ecosystems. The interactions between this bacterium and its sponge host may foster a symbiotic relationship, highlighting the importance of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S4059

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S4059 chromosome 1, complete

Gene Summary

Adenine Count

593177 bp

Thymine Count

611633 bp

Guanine Count

590156 bp

Cytosine Count

514860 bp

Genome Length

2309826 bp

Protein-coding Genes

3740 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tcpq domain-containing proteinCWC22_RS03330Not AvailableNegative757672 - 75828023954.5
lpxl/lpxp family kdo(2)-lipid iv(a) lauroyl/palmitoleoyl acyltransferaseCWC22_RS03335Not AvailableNegative758309 - 75923535695.5
outer membrane channel protein tolcCWC22_RS03340Not AvailableNegative759400 - 76074648630.9
nudix domain-containing proteinCWC22_RS03345Not AvailablePositive760982 - 76161123335.9
duf1249 domain-containing proteinCWC22_RS03350Not AvailablePositive761636 - 76207617048.4
metallophosphoesteraseCWC22_RS03355Not AvailablePositive762063 - 76283628824.9
yqia/ycfp family alpha/beta fold hydrolaseCWC22_RS03360Not AvailablePositive762821 - 76341722828.9
dna topoisomerase iv subunit bCWC22_RS03365Not AvailablePositive763414 - 76530369764.0
dna topoisomerase iv subunit aCWC22_RS03370Not AvailablePositive765384 - 76769085337.8
hypothetical proteinCWC22_RS03375Not AvailablePositive768077 - 76865221188.3

Displaying genes 711 – 720 of 3921 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.