Pseudoalteromonas rubra strain S4059

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S4059 is a marine bacterium characterized by its rod shape and a single replicon. This strain has been isolated from marine sponges, specifically from the host Mycale grandis. The association with marine sponges suggests that P. rubra may play a role in the complex microbial community found within these organisms. The habitat of this strain is significant as it indicates its adaptation to marine environments, which are often rich in biodiversity and complex ecological interactions. The relationship with Mycale grandis could imply a potential symbiotic role, contributing to the health of the sponge or interacting with other microbial inhabitants. The accession number for Pseudoalteromonas rubra strain S4059 is NZ_CP045429.1, which provides a reference for further genomic and taxonomic studies. Understanding the genomic characteristics of this strain could reveal insights into its metabolic capabilities and potential functions within its marine sponge habitat. Overall, the ecological insight that can be drawn from the existence of Pseudoalteromonas rubra strain S4059 is its potential contribution to the sponge microbiome, which is crucial for nutrient cycling and the overall health of marine ecosystems. The interactions between this bacterium and its sponge host may foster a symbiotic relationship, highlighting the importance of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S4059

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S4059 chromosome 1, complete

Gene Summary

Adenine Count

593177 bp

Thymine Count

611633 bp

Guanine Count

590156 bp

Cytosine Count

514860 bp

Genome Length

2309826 bp

Protein-coding Genes

3740 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine aminotransferaseCWC22_RS18850Not AvailableNegative4403634 - 440472839932.6
methylthioribulose 1-phosphate dehydrataseCWC22_RS18855Not AvailablePositive4404887 - 440550122486.6
acireductone synthaseCWC22_RS18860Not AvailablePositive4405498 - 440618425346.8
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenaseCWC22_RS18865Not AvailablePositive4406181 - 440672320714.1
s-methyl-5-thioribose-1-phosphate isomeraseCWC22_RS18870Not AvailableNegative4406747 - 440776936743.1
s-methyl-5-thioribose kinaseCWC22_RS18875Not AvailablePositive4408023 - 440922545122.4
duf885 domain-containing proteinCWC22_RS18880Not AvailableNegative4409284 - 441104466736.4
ggdef domain-containing proteinCWC22_RS18885Not AvailablePositive4411365 - 441237238382.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieCWC22_RS18890Not AvailablePositive4412504 - 441325928077.7
scp2 domain-containing proteinCWC22_RS18895Not AvailablePositive4413283 - 441390022881.4

Displaying genes 3771 – 3780 of 3921 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.