Pseudoalteromonas rubra strain S4059

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S4059 is a marine bacterium characterized by its rod shape and a single replicon. This strain has been isolated from marine sponges, specifically from the host Mycale grandis. The association with marine sponges suggests that P. rubra may play a role in the complex microbial community found within these organisms. The habitat of this strain is significant as it indicates its adaptation to marine environments, which are often rich in biodiversity and complex ecological interactions. The relationship with Mycale grandis could imply a potential symbiotic role, contributing to the health of the sponge or interacting with other microbial inhabitants. The accession number for Pseudoalteromonas rubra strain S4059 is NZ_CP045429.1, which provides a reference for further genomic and taxonomic studies. Understanding the genomic characteristics of this strain could reveal insights into its metabolic capabilities and potential functions within its marine sponge habitat. Overall, the ecological insight that can be drawn from the existence of Pseudoalteromonas rubra strain S4059 is its potential contribution to the sponge microbiome, which is crucial for nutrient cycling and the overall health of marine ecosystems. The interactions between this bacterium and its sponge host may foster a symbiotic relationship, highlighting the importance of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S4059

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S4059 chromosome 1, complete

Gene Summary

Adenine Count

593177 bp

Thymine Count

611633 bp

Guanine Count

590156 bp

Cytosine Count

514860 bp

Genome Length

2309826 bp

Protein-coding Genes

3740 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna accumulation protein ycedCWC22_RS12885Not AvailableNegative2970927 - 297145119360.0
maf family proteinCWC22_RS12890Not AvailablePositive2971572 - 297215921441.8
had-ia family hydrolaseCWC22_RS12895Not AvailableNegative2972121 - 297278923812.6
23s rrna pseudouridine(955/2504/2580) synthase rlucCWC22_RS12900Not AvailableNegative2972779 - 297374136393.3
ribonuclease eCWC22_RS12905Not AvailablePositive2974252 - 2977683126131.0
transglycosylase slt domain-containing proteinCWC22_RS12910Not AvailableNegative2978308 - 297962149210.1
lpp20 family lipoproteinCWC22_RS12915Not AvailableNegative2979670 - 298024820984.2
hypothetical proteinCWC22_RS12920Not AvailablePositive2980451 - 298216063392.6
penicillin-binding protein activator lpobCWC22_RS12925Not AvailablePositive2982166 - 298278023061.3
lpp20 family lipoproteinCWC22_RS12930Not AvailablePositive2982770 - 298376535742.3

Displaying genes 2581 – 2590 of 3921 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.