Pseudoalteromonas rubra strain S4059

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain S4059 is a marine bacterium characterized by its rod shape and a single replicon. This strain has been isolated from marine sponges, specifically from the host Mycale grandis. The association with marine sponges suggests that P. rubra may play a role in the complex microbial community found within these organisms. The habitat of this strain is significant as it indicates its adaptation to marine environments, which are often rich in biodiversity and complex ecological interactions. The relationship with Mycale grandis could imply a potential symbiotic role, contributing to the health of the sponge or interacting with other microbial inhabitants. The accession number for Pseudoalteromonas rubra strain S4059 is NZ_CP045429.1, which provides a reference for further genomic and taxonomic studies. Understanding the genomic characteristics of this strain could reveal insights into its metabolic capabilities and potential functions within its marine sponge habitat. Overall, the ecological insight that can be drawn from the existence of Pseudoalteromonas rubra strain S4059 is its potential contribution to the sponge microbiome, which is crucial for nutrient cycling and the overall health of marine ecosystems. The interactions between this bacterium and its sponge host may foster a symbiotic relationship, highlighting the importance of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain S4059

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain S4059 chromosome 1, complete

Gene Summary

Adenine Count

593177 bp

Thymine Count

611633 bp

Guanine Count

590156 bp

Cytosine Count

514860 bp

Genome Length

2309826 bp

Protein-coding Genes

3740 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaCWC22_RS11495Not AvailableNegative2646583 - 264737728666.4
tigr01621 family pseudouridine synthaseCWC22_RS11500Not AvailableNegative2647379 - 264804424347.2
3-deoxy-manno-octulosonate cytidylyltransferaseCWC22_RS11505Not AvailableNegative2648031 - 264879528319.9
trm112 family proteinCWC22_RS11510Not AvailableNegative2648783 - 26489807420.96
tetraacyldisaccharide 4'-kinaseCWC22_RS11515Not AvailableNegative2648970 - 264995336319.9
lipid a export permease/atp-binding protein msbaCWC22_RS11520Not AvailableNegative2649950 - 265169264455.8
dna internalization-related competence protein comec/rec2CWC22_RS11525Not AvailableNegative2651756 - 265401183908.9
duf2062 domain-containing proteinCWC22_RS11530Not AvailablePositive2653991 - 265450919484.9
marc family proteinCWC22_RS11535Not AvailableNegative2654633 - 265524121415.1
leucine-rich repeat domain-containing proteinCWC22_RS11540Not AvailableNegative2655500 - 2658841121036.0

Displaying genes 2301 – 2310 of 3921 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.