Pukyongiella litopenaei strain SH-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pukyongiella

Description

Pukyongiella litopenaei strain SH-1 is a notable bacterium characterized by its genomic structure, which comprises four distinct replicons. This multi-replicon feature may contribute to its adaptability and genetic diversity, potentially offering advantages in various environmental conditions. The strain has been cataloged under several accessions, specifically NZ_CP043619.1, NZ_CP043620.1, NZ_CP043621.1, and NZ_CP043622.1. These accessions indicate that the genetic material of Pukyongiella litopenaei strain SH-1 has been sequenced and is publicly available for further research and analysis. Understanding the traits of Pukyongiella litopenaei strain SH-1 can provide insights into its ecological role, particularly in aquatic environments where it may interact with other microorganisms and contribute to biogeochemical processes. The presence of multiple replicons suggests a complex regulatory mechanism, which could enhance its resilience to varying conditions, such as changes in nutrient availability or stressors in its habitat. This adaptability may facilitate its survival in specific ecological niches, potentially affecting the microbial community dynamics in those environments. Further studies on this strain could illuminate its biological functions and contributions to ecological balance, highlighting the significance of microbial diversity in sustaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPukyongiella
SpeciesPukyongiella litopenaei
Strainstrain SH-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pukyongiella litopenaei strain SH-1 plasmid p3, complete sequence.

Gene Summary

Adenine Count

14236 bp

Thymine Count

13734 bp

Guanine Count

19712 bp

Cytosine Count

19681 bp

Genome Length

67363 bp

Protein-coding Genes

55 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Isppu13, transposase orf3C6Y53_RS20470Not AvailablePositive44229 - 444899993.03
Transposase/is proteinC6Y53_RS20475Not AvailablePositive44461 - 446587491.98
phasin family proteinC6Y53_RS20480Not AvailableNegative44885 - 4528014049.7
duf445 domain-containing proteinC6Y53_RS20485Not AvailableNegative45385 - 4663246245.7
Hypothetical proteinC6Y53_RS20490Not AvailableNegative46649 - 4747930417.1
para family proteinC6Y53_RS20235Not AvailablePositive1644 - 299951201.8
parb n-terminal domain-containing proteinC6Y53_RS20240Not AvailablePositive2996 - 404838857.0
plasmid replication protein repcC6Y53_RS20245Not AvailablePositive4283 - 557247753.4
tyrosine-type recombinase/integraseC6Y53_RS20250Not AvailableNegative5581 - 667840258.0
duf1403 family proteinC6Y53_RS20255Not AvailablePositive6835 - 761427934.8

Displaying genes 21 – 30 of 354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.